I started them a week ago, following all the instructions but only topping up with water to the 3.5L mark so that the fermentation wouldn't rise up in to the airlock.
My 'cunning plan' was to top up to the 4.5L mark when the most fervent fermentation had subsided. However, I now realise my cunning plan didn't consider how I was going to stir the extra litre of water in.

Any suggestions? Swirling the water around now would disturb all the crap at the bottom of the demijohns. Would that affect the fermentation / leave undesirable flavours?